Microorganisms act directly or indirectly on the farmed species and the environment: they decompose feces, feed residues and phytoplankton residues, and through oxidation, reduction, photosynthesis, assimilation and dissimilation convert organic matter into simple compounds — keeping the water quality normal and the ecosystem balanced. They participate in the carbon cycle mainly by transforming carbon compounds, especially nitrogenous and carbonaceous organics, through fermentation and oxidation: oxidation in the surface aerobic zone and anaerobic fermentation in the bottom anaerobic zone convert carbon-containing substances into CO₂ for plant photosynthesis.

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